fireDB
 
    LAST RELEASE:    4 Dec 2009

fireDB: a database of annotated functionally important residues

fireDB is a database of PDB structures and their associated ligands. fireDB also contains the largest set of reliably annotated functionally important residues.

A detailed description of the functionalities of this page can be found in the FireDB online help.

Annotated functionally important residues come from protein-ligand atom contacts and the Catalytic Site Atlas.


Search the database by: Atomic distance cut-off
(in Angstroms)

Calculate contacts between
proteins and ligands with

The Ligand Contact Tool
PDB chain (e.g. 101m or 1tcoC ) 0.5 A + Van der Waals radii
1.0 A + Van der Waals radii
1.5 A + Van der Waals radii
UniProt primary accession number (e.g. P62942)
PDB/UniProt keyword
Reference:
Gonzalo Lopez, A. Valencia, and M. Tress. FireDB - a database of functionally important residues from proteins of known structure Nucl. Acids Res. 2007 35: D219-D223

Technical support: glopez@cnio.es
Scientifical support: glopez@cnio.es, mtress@cnio.es