FireDB
 
  LAST RELEASE:    27 Jan 2012

FireDB: a database of annotated functionally important residues

FireDB is a database of PDB structures and their associated ligands. FireDB also contains the largest set of reliably annotated functionally important residues.

A detailed description of the functionalities of this page can be found in the FireDB online help.

Annotated functionally important residues come from protein-ligand atom contacts and the Catalytic Site Atlas.


Search the database by:
Atomic distance cut-off
(in Angstroms)

Calculate contacts between
proteins and ligands with

The Ligand Contact Tool
PDB chain
(e.g. 101m or 1tcoC)		 0.5 A + Van der Waals radii  
1.0 A + Van der Waals radii  
1.5 A + Van der Waals radii  
UniProt primary accession number
(e.g. P62942)
PDB/UniProt keyword
Reference:
"FireDB--a database of functionally important residues from proteins of known structure" Lopez G, Valencia A and Tress ML.
Nucleic Acids Research 2006; doi: 10.1093/nar/gkl897

Technical support:   pmaietta@cnio.es
Scientific support: mtress@cnio.es, Gonzalo Lopez